The Serapis platform
Built for genomic data at clinical scale — from specimen to signed report.
Four layers, one governed environment.
Ingest layer
Instrument integration, barcode scanning, chain-of-custody, sample manifests.
Compute layer
Container-native Nextflow pipelines with version-pinned tools and container digests.
Knowledge layer
ClinVar, OMIM, gnomAD, COSMIC, PharmGKB plus your curated variant knowledge base.
Delivery layer
Clinical reports, FHIR bundles, structured JSON and webhook events.
Assay throughput at a glance
Live counters for every panel and pipeline in your workspace. Data is exported to your data warehouse on a schedule you control.
- Per-assay volume and margin
- Coverage and duplicate-rate alerts
- Turnaround performance vs SLA
Security & compliance
ISO 27001 certified infrastructure
Regional data residency in EU, US and APAC
AES-256 at rest, TLS 1.3 in transit
Immutable audit trail on every object
Role-based access with fine-grained scopes
SOC 2 Type II aligned controls
Integrations
Connectors for the systems your lab already runs.
HL7 FHIR R4
DiagnosticReport, Observation, Specimen and Patient resources.
REST API
Versioned JSON API with scoped tokens and idempotent writes.
Webhooks
Signed events for sample state changes and report availability.
Bulk export
Scheduled exports to S3-compatible object storage.