Trusted by 940+ clinical labs worldwide
Precision genomics,
Precision genomics,
one secure cloud.
Serapis unifies sample intake, bioinformatics, variant interpretation and clinical reporting in a single audited cloud environment.
0samples processed
0labs & clinics
0variant records
RESEARCHER PORTAL
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For clinical geneticists, laboratory staff and bioinformaticians
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TLS 1.3 · ISO 27001 · GDPR compliant
SMP-28419 · variant review
Trusted with genomic data by leading institutions
Karolinska Genomics
MedGen Lab
Institute of Bioinformatics
Genome Clinic
Sahlgrenska Academy
BioData Research
Capabilities
A complete operating system for genomics
Every step of the molecular workflow — sequenced, annotated, interpreted and reported — inside one governed environment.
Variant annotation
Automated cross-check against ClinVar, OMIM, gnomAD, dbSNP and your internal knowledge base.
Cloud-native storage
Versioned storage for FASTQ, BAM, CRAM and VCF with per-cohort access policies.
Analytics & QC
Dashboards for sample flow, coverage, contamination, turnaround time and reporting KPIs.
Clinical reporting
Sign-out templates with HL7 FHIR export, audit trail and electronic signature.
Interoperability
HL7 FHIR, REST, webhooks and pre-built connectors for LIS, EMR and hospital MIS.
Team collaboration
Case conferences, inline variant comments, review queues and role-based approvals.
Security by default
Encryption at rest and in transit, scoped tokens, MFA and immutable audit logs.
Reproducible pipelines
Version-pinned Nextflow pipelines with container digests and full provenance.
Global compliance
ISO 27001, ISO 13485 aligned, GDPR, HIPAA-ready with regional data residency.
Workflow
From tube to report in five governed stages
01
Accessioning
Barcoded sample intake with full chain of custody.
02
Sequencing
Instrument-agnostic run tracking and real-time QC.
03
Bioinformatics
Pinned Nextflow pipelines for alignment, calling and annotation.
04
Interpretation
ACMG/AMP-guided review with structured evidence.
05
Reporting
Signed clinical report delivered as PDF and FHIR.
Analytics
Live laboratory throughput
Real-time visibility into sample intake, pipeline runs and signed reports across every connected lab.
- Per-instrument run monitoring and QC trending
- Coverage, contamination and duplicate-rate alerts
- Turnaround-time KPIs and cohort tracking
0% platform uptime
0h median report turnaround
0countries served
0bit encryption
Research
Browse all research areas
Where Serapis is used
From hereditary cancer to population-scale screening.
Oncogenetics
Hereditary cancer syndromes
BRCA1/2, Lynch, TP53 and multigene panels with cascade testing support.
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Rare disease
Undiagnosed rare disease
WES and WGS for pediatric and adult rare disease diagnostics.
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Pharmacogenomics
Personalized prescribing
CYP450 and DPYD guided dosing with CDS-ready outputs.
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Distribution
Portfolio by research area
Across the Serapis network, oncology programs remain the largest share of clinical volume, followed by rare-disease diagnostics and pharmacogenomics.
- Oncogenetics · 38% of volume
- Rare disease · 27% of volume
- Pharmacogenomics · 19% of volume
Testimonials
Trusted by clinical and research leaders
Science
View all publications
Recent publications
Rapid WGS in critically ill neonates: a multi-site implementation study
Learn moreMachine-assisted ACMG classification reduces curator variance
Learn moreBring your lab onto Serapis
We will map your pipeline, integrate with your LIS and train your team — usually in under a month.